Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acry_2005TIGRFAM: conserved hypothetical membrane protein. (892 aa)    
Predicted Functional Partners:
Acry_2006
Conserved hypothetical protein.
 
    0.958
Acry_2004
Hypothetical protein.
 
     0.957
Acry_2007
PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase.
 
     0.918
Acry_0743
Hypothetical protein.
  
    0.777
Acry_2008
PFAM: protein of unknown function DUF1285.
 
     0.772
Acry_2845
Sterol desaturase-like protein.
   
 
 0.728
Acry_2009
PFAM: NUDIX hydrolase.
       0.652
Acry_1967
PFAM: uncharacterised conserved protein UCP032025.
  
     0.618
Acry_0149
Hypothetical protein.
  
     0.603
Acry_2010
PFAM: Polynucleotide adenylyltransferase region; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
 
     0.597
Your Current Organism:
Acidiphilium cryptum
NCBI taxonomy Id: 349163
Other names: A. cryptum JF-5, Acidiphilium cryptum JF-5, Acidiphilium cryptum str. JF-5, Acidiphilium cryptum strain JF-5, Acidiphilum cryptum JF-5
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