STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hpfSSU ribosomal protein S30P / sigma 54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (199 aa)    
Predicted Functional Partners:
rpsU
PFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
 
 
 
 0.880
rplI
LSU ribosomal protein L9P; Binds to the 23S rRNA.
 
   0.864
rpmI
PFAM: ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
 
 
   0.850
rpmA
PFAM: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.849
rpsI
PFAM: ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.849
rpmH
PFAM: ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
   
 
 0.848
rpsP
PFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
    
 
 0.848
rpmG
PFAM: ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
   
   0.847
rpsE
SSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
    
 
 0.847
rpmB
PFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
   
   0.846
Your Current Organism:
Acidiphilium cryptum
NCBI taxonomy Id: 349163
Other names: A. cryptum JF-5, Acidiphilium cryptum JF-5, Acidiphilium cryptum str. JF-5, Acidiphilium cryptum strain JF-5, Acidiphilum cryptum JF-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.