STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acry_2018PFAM: type II secretion system protein E. (445 aa)    
Predicted Functional Partners:
Acry_2017
PFAM: type II secretion system protein.
 
 
 0.999
Acry_2016
PFAM: type II secretion system protein.
 
 
 0.998
Acry_2019
Flp pilus assembly protein ATPase CpaE-like protein.
 
 
 0.997
Acry_2020
PFAM: SAF domain.
 
 
 0.997
Acry_0481
PFAM: type II and III secretion system protein; Belongs to the bacterial secretin family.
 
 0.992
Acry_0820
Response regulator receiver protein.
 
 
 0.990
Acry_2979
PFAM: TadE family protein.
 
  
 0.766
Acry_2021
PFAM: Flp/Fap pilin component.
  
  
 0.689
Acry_3033
PFAM: peptidase A24A, prepilin type IV.
 
     0.527
Acry_2978
PFAM: TadE family protein.
 
  
 0.513
Your Current Organism:
Acidiphilium cryptum
NCBI taxonomy Id: 349163
Other names: A. cryptum JF-5, Acidiphilium cryptum JF-5, Acidiphilium cryptum str. JF-5, Acidiphilium cryptum strain JF-5, Acidiphilum cryptum JF-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.