Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acry_2040PFAM: cytochrome bd ubiquinol oxidase, subunit I. (472 aa)    
Predicted Functional Partners:
Acry_2039
TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II.
 0.999
Acry_1634
TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II.
 0.998
Acry_1635
PFAM: cytochrome bd ubiquinol oxidase, subunit I.
  
  
 
0.922
Acry_2041
Transcriptional regulator, ArsR family; Belongs to the GbsR family.
  
  
 0.812
Acry_1637
TIGRFAM: ABC transporter, transmembrane region, type 1; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase.
 
  
 0.768
Acry_0554
TIGRFAM: ABC transporter, transmembrane region, type 1; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.763
Acry_0553
TIGRFAM: ABC transporter, transmembrane region, type 1; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.627
Acry_1636
TIGRFAM: Beta tubulin, autoregulation binding site; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.620
Acry_2042
PFAM: protein of unknown function UPF0187.
       0.581
Acry_1039
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
 0.568
Your Current Organism:
Acidiphilium cryptum
NCBI taxonomy Id: 349163
Other names: A. cryptum JF-5, Acidiphilium cryptum JF-5, Acidiphilium cryptum str. JF-5, Acidiphilium cryptum strain JF-5, Acidiphilum cryptum JF-5
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