Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acry_2183PFAM: glycosyl transferase, family 2. (995 aa)    
Predicted Functional Partners:
Acry_1894
Hypothetical protein.
 
 
 
 0.748
Acry_0548
Mannose-6-phosphate isomerase, type 2; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein.
  
  
 0.742
Acry_0162
Uncharacterized protein-like protein.
  
     0.725
Acry_0641
Hypothetical protein.
 
   
 0.687
Acry_1987
Hypothetical protein.
 
   
 0.682
Acry_2445
PFAM: outer membrane chaperone Skp (OmpH).
  
    0.681
Acry_0741
PFAM: ABC-2 type transporter.
 
  
 0.668
Acry_1429
PFAM: Endonuclease/exonuclease/phosphatase.
 
     0.667
Acry_0176
Hypothetical protein.
  
     0.664
Acry_0421
Hypothetical protein.
 
   
 0.659
Your Current Organism:
Acidiphilium cryptum
NCBI taxonomy Id: 349163
Other names: A. cryptum JF-5, Acidiphilium cryptum JF-5, Acidiphilium cryptum str. JF-5, Acidiphilium cryptum strain JF-5, Acidiphilum cryptum JF-5
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