Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
Acry_2200PFAM: OsmC family protein. (161 aa)    
Predicted Functional Partners:
Acry_2201
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; 3.A.1.4.-.
       0.651
Acry_2202
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; 3.A.1.4.-.
       0.651
Acry_2203
Amino acid/amide ABC transporter membrane protein 2, HAAT family; PFAM: inner-membrane translocator; 3.A.1.4.-; Belongs to the binding-protein-dependent transport system permease family.
       0.651
Acry_2204
Amino acid/amide ABC transporter membrane protein 1, HAAT family; PFAM: inner-membrane translocator; 3.A.1.4.-; Belongs to the binding-protein-dependent transport system permease family.
       0.634
Acry_2199
Transcriptional regulator, IclR family; TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein, IclR; beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR.
  
    0.458
Acry_2205
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; PFAM: Extracellular ligand-binding receptor; 3.A.1.4.-.
       0.444
Your Current Organism:
Acidiphilium cryptum
NCBI taxonomy Id: 349163
Other names: A. cryptum JF-5, Acidiphilium cryptum JF-5, Acidiphilium cryptum str. JF-5, Acidiphilium cryptum strain JF-5, Acidiphilum cryptum JF-5
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