Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acry_2341PFAM: DNA photolyase domain protein. (214 aa)    
Predicted Functional Partners:
Acry_2343
Deoxyribodipyrimidine photo-lyase family protein (cryptochrome); PFAM: DNA photolyase, FAD-binding.
     0.986
Acry_1728
PFAM: deoxyribodipyrimidine photolyase-related protein.
 
   
 0.747
Acry_0617
Deoxyribodipyrimidine photo-lyase family protein (cryptochrome).
  
     0.706
Acry_2339
Uncharacterized protein-like protein.
       0.592
Acry_2340
PFAM: protein of unknown function DUF1501.
       0.592
Acry_2334
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; Belongs to the LysR transcriptional regulatory family.
  
     0.486
Acry_2342
PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein.
       0.477
Acry_1615
Deoxyribodipyrimidine photo-lyase type I; PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein.
  
     0.454
Acry_2332
Uncharacterized protein-like protein; Belongs to the UPF0753 family.
  
     0.454
Acry_0012
PFAM: TspO/MBR family protein.
 
  
 0.444
Your Current Organism:
Acidiphilium cryptum
NCBI taxonomy Id: 349163
Other names: A. cryptum JF-5, Acidiphilium cryptum JF-5, Acidiphilium cryptum str. JF-5, Acidiphilium cryptum strain JF-5, Acidiphilum cryptum JF-5
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