Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acry_2865PFAM: cytochrome c, class I. (207 aa)    
Predicted Functional Partners:
Acry_0994
TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glucose-inhibited division protein A; glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; Belongs to the GcvT family.
   
 
 0.881
Acry_0043
Gluconate 2-dehydrogenase (acceptor); PFAM: cytochrome c, class I.
 
 0.868
Acry_1563
Cytochrome c-like protein.
  
 
 0.859
Acry_2946
PFAM: cytochrome c1.
  
 
 0.822
Acry_2945
Cytochrome b/b6, N-terminal domain protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
 
 0.819
Acry_3043
Monoheme cytochrome SoxX (sulfur oxidation); PFAM: cytochrome c, class I.
 
 
 0.805
Acry_0644
PFAM: cytochrome c, class I.
 
 
 
 0.788
Acry_2099
PFAM: cytochrome c, class I.
   
 
 0.760
Acry_0344
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
   
 
 0.741
Acry_2645
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
   
 
 0.741
Your Current Organism:
Acidiphilium cryptum
NCBI taxonomy Id: 349163
Other names: A. cryptum JF-5, Acidiphilium cryptum JF-5, Acidiphilium cryptum str. JF-5, Acidiphilium cryptum strain JF-5, Acidiphilum cryptum JF-5
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