Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acry_2979PFAM: TadE family protein. (185 aa)    
Predicted Functional Partners:
Acry_2978
PFAM: TadE family protein.
 
     0.956
Acry_2980
Hypothetical protein.
 
    0.918
Acry_2020
PFAM: SAF domain.
 
  
 0.889
Acry_2017
PFAM: type II secretion system protein.
 
  
 0.876
Acry_2018
PFAM: type II secretion system protein E.
 
  
 0.766
Acry_0902
PFAM: protein of unknown function DUF610, YibQ.
  
     0.762
Acry_2019
Flp pilus assembly protein ATPase CpaE-like protein.
 
  
 0.750
Acry_0820
Response regulator receiver protein.
 
  
 0.693
Acry_0734
Putative phage repressor; PFAM: peptidase S24, S26A and S26B; Belongs to the peptidase S24 family.
  
     0.686
Acry_0481
PFAM: type II and III secretion system protein; Belongs to the bacterial secretin family.
 
  
 0.674
Your Current Organism:
Acidiphilium cryptum
NCBI taxonomy Id: 349163
Other names: A. cryptum JF-5, Acidiphilium cryptum JF-5, Acidiphilium cryptum str. JF-5, Acidiphilium cryptum strain JF-5, Acidiphilum cryptum JF-5
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