STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mthe_0078Agmatine deiminase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; Porphyromonas-type peptidyl-arginine deiminase; KEGG: mhu:Mhun_0034 porphyromonas-type peptidyl-arginine deiminase. (624 aa)    
Predicted Functional Partners:
Mthe_1536
TIGRFAM: arginine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: ana:all3401 arginine decarboxylase.
  
  
  0.937
rps3ae
PFAM: ribosomal protein S3Ae; KEGG: mbu:Mbur_2336 ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family.
       0.733
Mthe_1517
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: noc:Noc_2450 PAS sensor signal transduction histidine kinase.
  
 
 0.724
Mthe_1524
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: noc:Noc_2450 PAS sensor signal transduction histidine kinase.
  
 
 0.724
Mthe_0076
PFAM: PRC-barrel domain protein; KEGG: mbu:Mbur_2035 PRC-barrel protein.
 
     0.543
Mthe_1404
PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: mba:Mbar_A2933 hydantoinase/oxoprolinase.
    
 0.527
Mthe_0086
PFAM: GCN5-related N-acetyltransferase; acetyl-CoA hydrolase/transferase; KEGG: syn:slr1888 hypothetical protein.
     
 0.526
Mthe_0619
PFAM: GCN5-related N-acetyltransferase; acetyl-CoA hydrolase/transferase; KEGG: syn:slr1888 hypothetical protein.
     
 0.526
Mthe_0173
PFAM: Hydantoinase/oxoprolinase; KEGG: mma:MM2511 hypothetical protein.
     
  0.499
Mthe_0395
PFAM: aldehyde dehydrogenase; KEGG: ecj:JW2636 succinate-semialdehyde dehydrogenase I, NADP-dependent.
 
 
 0.491
Your Current Organism:
Methanothrix thermoacetophila
NCBI taxonomy Id: 349307
Other names: M. thermoacetophila PT, Methanosaeta thermophila PT, Methanothrix thermoacetophila PT, Methanothrix thermophila DSM 6194, Methanothrix thermophila PT
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