STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mthe_0170PFAM: protein of unknown function RIO1; KEGG: mma:MM2013 serine/threonine protein kinase. (265 aa)    
Predicted Functional Partners:
Mthe_0090
KEGG: mba:Mbar_A3470 hypothetical protein.
   
 0.995
rps6e
PFAM: ribosomal protein S6e; KEGG: afu:AF0511 30S ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family.
 
  0.991
rps11
SSU ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family.
  
 
 0.991
rps5
SSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy.
  
 
 0.990
rps4
SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
  0.987
eif1a
Translation initiation factor 1A (aeIF-1A); Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.
 
 
 0.984
rps3ae
PFAM: ribosomal protein S3Ae; KEGG: mbu:Mbur_2336 ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family.
 
 
 0.977
rps3
SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
   
 0.967
rps15
PFAM: ribosomal protein S15; Ribosomal S13S15-like; KEGG: mba:Mbar_A1873 ribosomal protein S15p.
 
  0.965
Mthe_0548
Serine/threonine protein kinase; PFAM: protein of unknown function RIO1; KEGG: mba:Mbar_A2841 serine/threonine protein kinase.
  
 
0.964
Your Current Organism:
Methanothrix thermoacetophila
NCBI taxonomy Id: 349307
Other names: M. thermoacetophila PT, Methanosaeta thermophila PT, Methanothrix thermoacetophila PT, Methanothrix thermophila DSM 6194, Methanothrix thermophila PT
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