STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mthe_0645TIGRFAM: CRISPR-associated RAMP protein, Cmr6 family; PFAM: protein of unknown function DUF324; KEGG: sat:SYN_02247 hypothetical cytosolic protein. (341 aa)    
Predicted Functional Partners:
Mthe_0647
TIGRFAM: CRISPR-associated RAMP protein, Cmr4 family; PFAM: protein of unknown function DUF324; KEGG: dge:Dgeo_0962 CRISPR-associated RAMP Cmr4.
 
 
 
 0.993
Mthe_0649
TIGRFAM: CRISPR-associated protein, Crm2 family; KEGG: tte:TTE2639 predicted hydrolase of the HD superfamily (permuted catalytic motifs).
 
 
 
 0.993
Mthe_0646
TIGRFAM: CRISPR-associated protein, Cmr5 family; KEGG: sat:SYN_02248 hypothetical cytosolic protein.
 
 
 
 0.991
Mthe_0650
TIGRFAM: CRISPR-associated RAMP protein, Cmr1 family; PFAM: protein of unknown function DUF324; KEGG: sat:SYN_02252 hypothetical cytosolic protein.
 
 
 
 0.988
Mthe_0648
TIGRFAM: CRISPR-associated protein, Cmr3 family; KEGG: ttj:TTHB161 hypothetical protein.
 
   
 0.969
Mthe_0651
TIGRFAM: CRISPR-associated protein, TM1812 family; CRISPR-associated protein DxTHG motif; KEGG: tma:TM1812 hypothetical protein.
 
   
 0.949
Mthe_0644
KEGG: ppr:PBPRA1222 hypothetical protein.
 
     0.806
Mthe_0643
TIGRFAM: CRISPR-associated protein, Csx3 family; KEGG: cyb:CYB_0599 CRISPR-associated protein, Csx3 family.
       0.800
cas1
CRISPR-associated protein, Cas1 family; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
     0.654
Mthe_0641
TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated HD domain protein; SMART: DEAD-like helicases-like; KEGG: mst:Msp_0422 predicted helicase.
 
     0.533
Your Current Organism:
Methanothrix thermoacetophila
NCBI taxonomy Id: 349307
Other names: M. thermoacetophila PT, Methanosaeta thermophila PT, Methanothrix thermoacetophila PT, Methanothrix thermophila DSM 6194, Methanothrix thermophila PT
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