Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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Score
Mthe_0806Protein of unknown function DUF367; Probable pre-rRNA processing protein involved in ribosome biogenesis; Belongs to the TSR3 family. (162 aa)    
Predicted Functional Partners:
rpl40e
KEGG: mba:Mbar_A0674 ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.
 
    0.742
eif6
Translation initiation factor 6 (aeIF-6); Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex.
  
  
 0.690
Mthe_0548
Serine/threonine protein kinase; PFAM: protein of unknown function RIO1; KEGG: mba:Mbar_A2841 serine/threonine protein kinase.
 
  
 0.664
rpoD
DNA-directed RNA polymerase, subunit D; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
    0.609
Mthe_0831
rRNA biogenesis protein Nop56/Nop58; PFAM: Pre-mRNA processing ribonucleoprotein, binding region; KEGG: mbu:Mbur_1562 pre-mRNA processing ribonucleoprotein.
  
  
 0.608
Mthe_0267
PFAM: GTP-binding protein, HSR1-related; Nucleolar GTP-binding 1; Miro domain protein; KEGG: mba:Mbar_A2164 GTP-binding protein.
 
  
 0.605
Mthe_0171
PFAM: KH, type 1, domain protein; SMART: KH domain protein; KEGG: mbu:Mbur_0948 KH type RNA-binding protein.
 
 
 0.582
Mthe_0311
Conserved hypothetical protein; Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. Belongs to the adenylate kinase family. AK6 subfamily.
  
  
 0.565
rps8e
TIGRFAM: ribosomal protein S8e; PFAM: ribosomal protein S8E; KEGG: mac:MA0923 ribosomal protein S8e.
  
    0.562
rps3ae
PFAM: ribosomal protein S3Ae; KEGG: mbu:Mbur_2336 ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family.
 
    0.559
Your Current Organism:
Methanothrix thermoacetophila
NCBI taxonomy Id: 349307
Other names: M. thermoacetophila PT, Methanosaeta thermophila PT, Methanothrix thermoacetophila PT, Methanothrix thermophila DSM 6194, Methanothrix thermophila PT
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