STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mthe_0965PFAM: glycosyl transferase, family 2; KEGG: bth:BT1340 putative lipopolysaccharide biosynthesis glycosyltransferase. (275 aa)    
Predicted Functional Partners:
Mthe_0964
PFAM: glycosyl transferase, family 2; KEGG: noc:Noc_2177 rhamnosyltransferase.
 
    
0.829
Mthe_0962
Hypothetical protein.
       0.773
Mthe_0963
KEGG: rso:RSc1300 probable transmembrane protein.
       0.773
Mthe_1065
PFAM: ABC-2 type transporter; KEGG: mac:MA1176 polysaccharide ABC transporter, permease protein.
 
  
 0.663
Mthe_0953
dTDP-4-dehydrorhamnose reductase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: mth:MTH1792 dTDP-4-dehydrorhamnose reductase.
 
  
 0.650
Mthe_1066
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mac:MA1177 polysaccharide ABC transporter, ATP-binding protein.
 
  
 0.556
Mthe_0954
TIGRFAM: glucose-1-phosphate thymidyltransferase; PFAM: Nucleotidyl transferase; KEGG: chy:CHY_0976 glucose-1-phosphate thymidylyltransferase.
 
  
 0.553
Mthe_0956
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: mth:MTH1789 dTDP-glucose 4,6-dehydratase.
 
  
 0.541
Mthe_1064
PFAM: glycosyl transferase, group 1; KEGG: mac:MA1175 mannosyltransferase.
 
  
 0.500
Mthe_0955
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.454
Your Current Organism:
Methanothrix thermoacetophila
NCBI taxonomy Id: 349307
Other names: M. thermoacetophila PT, Methanosaeta thermophila PT, Methanothrix thermoacetophila PT, Methanothrix thermophila DSM 6194, Methanothrix thermophila PT
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