STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpl40eKEGG: mba:Mbar_A0674 ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family. (48 aa)    
Predicted Functional Partners:
rpl24e
LSU ribosomal protein L24E; Binds to the 23S rRNA.
 
 0.999
rpl44e
LSU ribosomal protein L44E; Binds to the 23S rRNA.
  
 0.999
rpl18e
PFAM: ribosomal protein L15; KEGG: mba:Mbar_A1428 ribosomal protein L18e; Belongs to the eukaryotic ribosomal protein eL18 family.
  
 0.999
rps24e
PFAM: Ribosomal protein S24e; KEGG: mma:MM0599 SSU ribosomal protein S24E; Belongs to the eukaryotic ribosomal protein eS24 family.
 
 0.999
rpl31e
PFAM: Ribosomal protein L31e; KEGG: mma:MM0806 LSU ribosomal protein L31E; Belongs to the ribosomal protein L31e family.
  
 0.999
rpl19e
LSU ribosomal protein L19E; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family.
  
 0.999
Mthe_1711
PFAM: Ribosomal protein L32e; KEGG: mbu:Mbur_0018 ribosomal protein L32e.
  
 0.999
rps2
PFAM: ribosomal protein S2; KEGG: mbu:Mbur_2393 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
  
 0.998
rps6e
PFAM: ribosomal protein S6e; KEGG: afu:AF0511 30S ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 0.998
rps17e
KEGG: pfu:PF1491 30S ribosomal protein S17e; Belongs to the eukaryotic ribosomal protein eS17 family.
   
 0.998
Your Current Organism:
Methanothrix thermoacetophila
NCBI taxonomy Id: 349307
Other names: M. thermoacetophila PT, Methanosaeta thermophila PT, Methanothrix thermoacetophila PT, Methanothrix thermophila DSM 6194, Methanothrix thermophila PT
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