STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCK_00644Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain. (367 aa)    
Predicted Functional Partners:
LCK_00122
AraC-type DNA-binding domain-containing protein; COG2207K.
 
 
 0.805
rpoA
DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.571
adhE
Alcohol dehydrogensae; COG1012C; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
 
   
 0.501
nadR
Predicted ATPase/kinase involved in NAD metabolism; COG1056H.
  
    0.451
LCK_01218
PTS system, fructose-specific IIABC component; COG1299G.
    
 
 0.428
araR
Arabinose operon repressor; COG1609K.
  
  
 0.409
ylcC
Sortase (surface protein transpeptidase).
       0.401
LCK_01369
ADP-ribosylglycohydrolase.
 
    0.400
Your Current Organism:
Leuconostoc citreum
NCBI taxonomy Id: 349519
Other names: L. citreum KM20, Leuconostoc citreum KM20, Leuconostoc citreum str. KM20, Leuconostoc citreum strain KM20
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