STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rplURibosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (99 aa)    
Predicted Functional Partners:
rpmA
Ribosomal protein L27; COG0211J; TIGR00062; Belongs to the bacterial ribosomal protein bL27 family.
 
 
 0.999
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
 
 
 0.995
rpsP
Ribosomal protein S16; COG0228J; TIGR00002; Belongs to the bacterial ribosomal protein bS16 family.
 
 
 0.995
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
 
 
 0.995
rpsI
Ribosomal protein S9; COG0103J; Belongs to the universal ribosomal protein uS9 family.
 
 
 0.995
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
 
 
 0.994
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 
 0.994
rpmB
Ribosomal protein L28; COG0227J; TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.994
rpsB
Ribosomal protein S2; COG0052J; TIGR01011; Belongs to the universal ribosomal protein uS2 family.
  
 
 0.994
rpmF
Ribosomal protein L32; COG0333J; TIGR01031; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.994
Your Current Organism:
Leuconostoc citreum
NCBI taxonomy Id: 349519
Other names: L. citreum KM20, Leuconostoc citreum KM20, Leuconostoc citreum str. KM20, Leuconostoc citreum strain KM20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.