STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCH_00416TRAP-type mannitol/chloroaromatic compound transport system, small permease component; COG4665. (181 aa)    
Predicted Functional Partners:
HCH_00417
TRAP-type mannitol/chloroaromatic compound transport system, large permease component; COG4664.
  
 0.968
HCH_00415
TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.883
HCH_04275
TRAP-type mannitol/chloroaromatic compound transport system, large permease component; COG4664.
  
 0.864
HCH_00746
TRAP-type mannitol/chloroaromatic compound transport system, large permease component; COG4664.
  
 0.858
HCH_03542
TRAP-type mannitol/chloroaromatic compound transport system, large permease component; COG4664.
  
 0.836
HCH_00744
TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.789
HCH_04273
TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.789
HCH_00418
Signal transduction histidine kinase; COG4564.
       0.620
HCH_03539
TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component; COG4663.
 
    0.616
HCH_00419
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; COG2197.
       0.577
Your Current Organism:
Hahella chejuensis
NCBI taxonomy Id: 349521
Other names: H. chejuensis KCTC 2396, Hahella chejuensis KCTC 2396, Hahella chejuensis str. KCTC 2396, Hahella chejuensis strain KCTC 2396
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