Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HCH_00447 | HCH_00452 | HCH_00447 | HCH_00452 | DnaK suppressor protein; COG1734. | Uncharacterized flavoprotein; COG0426. | 0.578 |
HCH_00447 | HCH_03590 | HCH_00447 | HCH_03590 | DnaK suppressor protein; COG1734. | Outer membrane protein W; COG3047. | 0.600 |
HCH_00447 | HCH_03989 | HCH_00447 | HCH_03989 | DnaK suppressor protein; COG1734. | Uncharacterized conserved protein; COG4273. | 0.568 |
HCH_00447 | HCH_06887 | HCH_00447 | HCH_06887 | DnaK suppressor protein; COG1734. | Uncharacterized flavoprotein; COG0426. | 0.578 |
HCH_00447 | hfq | HCH_00447 | HCH_05383 | DnaK suppressor protein; COG1734. | Uncharacterized host factor I protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.693 |
HCH_00447 | rpoA | HCH_00447 | HCH_06193 | DnaK suppressor protein; COG1734. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.647 |
HCH_00447 | rpoB | HCH_00447 | HCH_06224 | DnaK suppressor protein; COG1734. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.679 |
HCH_00447 | rpoC | HCH_00447 | HCH_06223 | DnaK suppressor protein; COG1734. | DNA-directed RNA polymerase, beta' subunit/160 kD subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.790 |
HCH_00447 | rpoD | HCH_00447 | HCH_06274 | DnaK suppressor protein; COG1734. | RNA polymerase sigma-70 factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.595 |
HCH_00447 | rpoZ | HCH_00447 | HCH_06314 | DnaK suppressor protein; COG1734. | DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.672 |
HCH_00452 | HCH_00447 | HCH_00452 | HCH_00447 | Uncharacterized flavoprotein; COG0426. | DnaK suppressor protein; COG1734. | 0.578 |
HCH_00452 | HCH_03590 | HCH_00452 | HCH_03590 | Uncharacterized flavoprotein; COG0426. | Outer membrane protein W; COG3047. | 0.587 |
HCH_00452 | HCH_03989 | HCH_00452 | HCH_03989 | Uncharacterized flavoprotein; COG0426. | Uncharacterized conserved protein; COG4273. | 0.513 |
HCH_03590 | HCH_00447 | HCH_03590 | HCH_00447 | Outer membrane protein W; COG3047. | DnaK suppressor protein; COG1734. | 0.600 |
HCH_03590 | HCH_00452 | HCH_03590 | HCH_00452 | Outer membrane protein W; COG3047. | Uncharacterized flavoprotein; COG0426. | 0.587 |
HCH_03590 | HCH_06887 | HCH_03590 | HCH_06887 | Outer membrane protein W; COG3047. | Uncharacterized flavoprotein; COG0426. | 0.587 |
HCH_03989 | HCH_00447 | HCH_03989 | HCH_00447 | Uncharacterized conserved protein; COG4273. | DnaK suppressor protein; COG1734. | 0.568 |
HCH_03989 | HCH_00452 | HCH_03989 | HCH_00452 | Uncharacterized conserved protein; COG4273. | Uncharacterized flavoprotein; COG0426. | 0.513 |
HCH_03989 | HCH_06887 | HCH_03989 | HCH_06887 | Uncharacterized conserved protein; COG4273. | Uncharacterized flavoprotein; COG0426. | 0.513 |
HCH_06887 | HCH_00447 | HCH_06887 | HCH_00447 | Uncharacterized flavoprotein; COG0426. | DnaK suppressor protein; COG1734. | 0.578 |
page 1 of 3