STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCH_00696Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains COG2204. (453 aa)    
Predicted Functional Partners:
HCH_04233
Sigma 54-dependent transcriptional activator.
  
  
 
0.920
HCH_00695
Signal transduction histidine kinase; COG0642.
 
 
 0.858
flgK
Flagellar hook-associated protein; COG1256; Belongs to the flagella basal body rod proteins family.
  
  
 0.828
rpoN
RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.789
HCH_01034
Signal transduction histidine kinase, nitrogen specific; COG3852.
 
 0.627
HCH_05172
Flagellar synthesis regulator FleN; ATPase involved in chromosome partitioning; COG0455.
  
 
 0.563
fliG
Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
  
 0.523
HCH_00541
Chemotaxis protein histidine kinase and related kinase; COG0643.
  
 
 0.518
HCH_03847
Chemotaxis protein histidine kinase and related kinase; COG0643.
  
 
 0.518
HCH_05173
Flagellar GTP-binding protein; COG1419.
  
  
 0.518
Your Current Organism:
Hahella chejuensis
NCBI taxonomy Id: 349521
Other names: H. chejuensis KCTC 2396, Hahella chejuensis KCTC 2396, Hahella chejuensis str. KCTC 2396, Hahella chejuensis strain KCTC 2396
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.