STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCH_00854ABC-type proline/glycine betaine transport system, ATPase component; COG4175. (392 aa)    
Predicted Functional Partners:
HCH_00852
ABC-type proline/glycine betaine transport system, periplasmic components; COG2113.
 
 0.999
HCH_00853
ABC-type proline/glycine betaine transport system, permease component; COG4176.
 0.999
HCH_01362
ABC-type proline/glycine betaine transport system, permease component; COG4176.
 0.997
HCH_01363
ABC-type proline/glycine betaine transport system, periplasmic components; COG2113.
 
 0.996
HCH_01361
ABC-type proline/glycine betaine transport system, ATPase component; COG4175.
  
  
 
0.911
betI
Transcriptional regulator; Repressor involved in choline regulation of the bet genes.
 
   
 0.726
modB
Molybdate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
    
 0.699
HCH_03386
ABC-type multidrug transport system, ATPase component; COG1131.
 
    
0.687
betA
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
 
   
 0.624
HCH_00159
ABC-type proline/glycine betaine transport system, permease component; COG1174.
   
 0.605
Your Current Organism:
Hahella chejuensis
NCBI taxonomy Id: 349521
Other names: H. chejuensis KCTC 2396, Hahella chejuensis KCTC 2396, Hahella chejuensis str. KCTC 2396, Hahella chejuensis strain KCTC 2396
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