Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HCH_00368 | HCH_00476 | HCH_00368 | HCH_00476 | Response regulator containing a CheY-like receiver domain and a GGDEF domain; COG3706. | FOG: PAS/PAC domain; COG2202. | 0.402 |
HCH_00368 | HCH_00626 | HCH_00368 | HCH_00626 | Response regulator containing a CheY-like receiver domain and a GGDEF domain; COG3706. | FOG: GGDEF domain; COG2199. | 0.507 |
HCH_00368 | HCH_00967 | HCH_00368 | HCH_00967 | Response regulator containing a CheY-like receiver domain and a GGDEF domain; COG3706. | FOG: EAL domain; COG2200. | 0.984 |
HCH_00368 | HCH_00968 | HCH_00368 | HCH_00968 | Response regulator containing a CheY-like receiver domain and a GGDEF domain; COG3706. | Signal transduction histidine kinase; COG0642. | 0.799 |
HCH_00368 | HCH_01663 | HCH_00368 | HCH_01663 | Response regulator containing a CheY-like receiver domain and a GGDEF domain; COG3706. | Response regulator containing a CheY-like receiver domain and a GGDEF domain; COG3706. | 0.451 |
HCH_00368 | HCH_02371 | HCH_00368 | HCH_02371 | Response regulator containing a CheY-like receiver domain and a GGDEF domain; COG3706. | FOG: GGDEF domain; COG2199. | 0.471 |
HCH_00368 | HCH_02971 | HCH_00368 | HCH_02971 | Response regulator containing a CheY-like receiver domain and a GGDEF domain; COG3706. | FOG: GGDEF domain; COG2199. | 0.542 |
HCH_00368 | flgK | HCH_00368 | HCH_04473 | Response regulator containing a CheY-like receiver domain and a GGDEF domain; COG3706. | Flagellar hook-associated protein; COG1256; Belongs to the flagella basal body rod proteins family. | 0.578 |
HCH_00476 | HCH_00368 | HCH_00476 | HCH_00368 | FOG: PAS/PAC domain; COG2202. | Response regulator containing a CheY-like receiver domain and a GGDEF domain; COG3706. | 0.402 |
HCH_00476 | HCH_00626 | HCH_00476 | HCH_00626 | FOG: PAS/PAC domain; COG2202. | FOG: GGDEF domain; COG2199. | 0.663 |
HCH_00476 | HCH_00967 | HCH_00476 | HCH_00967 | FOG: PAS/PAC domain; COG2202. | FOG: EAL domain; COG2200. | 0.950 |
HCH_00476 | HCH_00968 | HCH_00476 | HCH_00968 | FOG: PAS/PAC domain; COG2202. | Signal transduction histidine kinase; COG0642. | 0.892 |
HCH_00476 | HCH_02371 | HCH_00476 | HCH_02371 | FOG: PAS/PAC domain; COG2202. | FOG: GGDEF domain; COG2199. | 0.586 |
HCH_00476 | HCH_02971 | HCH_00476 | HCH_02971 | FOG: PAS/PAC domain; COG2202. | FOG: GGDEF domain; COG2199. | 0.480 |
HCH_00476 | flgK | HCH_00476 | HCH_04473 | FOG: PAS/PAC domain; COG2202. | Flagellar hook-associated protein; COG1256; Belongs to the flagella basal body rod proteins family. | 0.539 |
HCH_00626 | HCH_00368 | HCH_00626 | HCH_00368 | FOG: GGDEF domain; COG2199. | Response regulator containing a CheY-like receiver domain and a GGDEF domain; COG3706. | 0.507 |
HCH_00626 | HCH_00476 | HCH_00626 | HCH_00476 | FOG: GGDEF domain; COG2199. | FOG: PAS/PAC domain; COG2202. | 0.663 |
HCH_00626 | HCH_00967 | HCH_00626 | HCH_00967 | FOG: GGDEF domain; COG2199. | FOG: EAL domain; COG2200. | 0.915 |
HCH_00626 | HCH_00968 | HCH_00626 | HCH_00968 | FOG: GGDEF domain; COG2199. | Signal transduction histidine kinase; COG0642. | 0.874 |
HCH_00626 | HCH_01663 | HCH_00626 | HCH_01663 | FOG: GGDEF domain; COG2199. | Response regulator containing a CheY-like receiver domain and a GGDEF domain; COG3706. | 0.497 |
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