STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCH_01106Cytosine deaminase and related metal-dependent Hydrolase; COG0402. (453 aa)    
Predicted Functional Partners:
xdhC
Xanthine and CO dehydrogenase maturation factor, XdhC/CoxF family; COG1975.
 
    0.755
HCH_01093
Transthyretin-like protein; COG2351; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
   
 0.681
HCH_01105
Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein; COG1744.
 
     0.674
xdhB
Xanthine dehydrogenase, molybdopterin-binding subunit B; COG4631.
 
  
 0.662
HCH_01094
Uncharacterized protein conserved in bacteria; COG3195.
 
     0.651
HCH_01108
Transcriptional regulator; COG1309.
 
     0.622
HCH_01090
Predicted membrane protein; COG3748.
 
     0.617
xdhA
Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A; COG4630.
 
     0.559
HCH_01102
ABC-type uncharacterized transport system, permease component; COG4603; Belongs to the binding-protein-dependent transport system permease family.
 
     0.521
HCH_01103
Uncharacterized ABC-type transport system, permease component; COG1079; Belongs to the binding-protein-dependent transport system permease family.
 
     0.503
Your Current Organism:
Hahella chejuensis
NCBI taxonomy Id: 349521
Other names: H. chejuensis KCTC 2396, Hahella chejuensis KCTC 2396, Hahella chejuensis str. KCTC 2396, Hahella chejuensis strain KCTC 2396
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