STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCH_01515Predicted exonuclease of the beta-lactamase fold involved in RNA processing; COG1236. (453 aa)    
Predicted Functional Partners:
deoA
Thymidine phosphorylase; COG0213.
    0.978
gpmI
2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
   
 0.895
HCH_00155
RNA-binding protein (RRM domain); COG0724.
    
 0.876
HCH_00444
RNA-binding protein (RRM domain); COG0724.
    
 0.876
HCH_03476
Protein containing FG-GAP repeats.
    
 0.856
HCH_03623
Methyl-accepting chemotaxis protein; COG0840.
    
 0.856
HCH_05588
FOG: WD40 repeat; COG2319.
    
 0.856
HCH_06416
FOG: WD40 repeat; COG2319.
    
 0.856
HCH_06531
Diadenosine tetraphosphatase and related serine/threonine protein phosphatase; COG0639.
   
 
 0.849
pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
    0.844
Your Current Organism:
Hahella chejuensis
NCBI taxonomy Id: 349521
Other names: H. chejuensis KCTC 2396, Hahella chejuensis KCTC 2396, Hahella chejuensis str. KCTC 2396, Hahella chejuensis strain KCTC 2396
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