STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCH_01918Predicted aspartyl protease; COG3577. (196 aa)    
Predicted Functional Partners:
nadC
Nicotinate-nucleotide pyrophosphorylase; TIGRFAMsMatches:TIGR00078; Belongs to the NadC/ModD family.
       0.796
HCH_01919
Conserved hypothetical protein.
 
     0.543
HCH_01921
Negative regulator of beta-lactamase expression; COG3023.
 
     0.512
HCH_01915
Conserved hypothetical protein.
       0.462
HCH_00246
Conserved hypothetical protein; Belongs to the UPF0312 family.
  
     0.452
HCH_01916
Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain; COG5001.
       0.444
HCH_00655
Uncharacterized protein conserved in bacteria; COG3495.
  
     0.427
HCH_04554
Phage prohead protease, HK97 family; TIGRFAMsMatches:TIGR01543.
  
     0.424
ligT
2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family.
       0.400
Your Current Organism:
Hahella chejuensis
NCBI taxonomy Id: 349521
Other names: H. chejuensis KCTC 2396, Hahella chejuensis KCTC 2396, Hahella chejuensis str. KCTC 2396, Hahella chejuensis strain KCTC 2396
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.