STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCH_023033-methyladenine DNA glycosylase; COG2818. (221 aa)    
Predicted Functional Partners:
msrB
Conserved domain frequently associated with peptide methionine sulfoxide reductase; COG0229; Belongs to the MsrB Met sulfoxide reductase family.
       0.739
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.613
HCH_03926
Histone acetyltransferase HPA2/related acetyltransferase; COG0454.
  
     0.551
HCH_02301
Aspartate/tyrosine/aromatic aminotransferase; COG0436.
       0.521
HCH_04648
Adenosine deaminase; COG2169.
     
 0.473
HCH_02304
Glutathione peroxidase; COG0386; Belongs to the glutathione peroxidase family.
       0.470
HCH_02305
Transcriptional regulator; COG1846.
       0.470
HCH_06000
Uncharacterized protein conserved in bacteria; COG5345.
  
     0.435
HCH_02300
Conserved hypothetical protein.
       0.400
Your Current Organism:
Hahella chejuensis
NCBI taxonomy Id: 349521
Other names: H. chejuensis KCTC 2396, Hahella chejuensis KCTC 2396, Hahella chejuensis str. KCTC 2396, Hahella chejuensis strain KCTC 2396
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