STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCH_02465RTX toxins and related Ca2+-binding protein; COG2931. (952 aa)    
Predicted Functional Partners:
HCH_05453
Chitinase; COG3469.
 
   
 0.786
HCH_03164
Pectate lyase; COG3866.
  
   
 0.774
HCH_03072
Conserved hypothetical protein.
  
     0.764
HCH_02464
Probable cellulase.
 
 
0.741
HCH_00869
Chitinase; COG3469.
  
   
 0.729
HCH_03914
Endoglucanase; COG2730; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.726
HCH_04441
Protein containing QXW lectin repeats.
  
 
   0.723
HCH_03303
Protein containing QXW lectin repeats.
 
     0.716
HCH_04439
Protein containing QXW lectin repeats.
  
 
   0.704
HCH_02502
Conserved hypothetical protein.
  
     0.699
Your Current Organism:
Hahella chejuensis
NCBI taxonomy Id: 349521
Other names: H. chejuensis KCTC 2396, Hahella chejuensis KCTC 2396, Hahella chejuensis str. KCTC 2396, Hahella chejuensis strain KCTC 2396
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