STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCH_02643Lysophospholipase; COG2267. (312 aa)    
Predicted Functional Partners:
nuoF
NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit; COG1894.
  
 
 0.983
HCH_00107
Uncharacterized anaerobic dehydrogenase; COG3383.
   
 
 0.871
HCH_01009
Ferredoxin; COG1145.
   
   0.820
HCH_02966
Polyketide synthase modules and related protein; COG3321.
   
 
 0.606
HCH_05898
Cytochrome c1; COG2857.
   
    0.600
HCH_01282
Predicted nucleoside-diphosphate-sugar epimerase; COG0702.
   
   0.586
HCH_02124
Predicted nucleoside-diphosphate-sugar epimerase; COG0702.
   
   0.586
HCH_03341
Predicted nucleoside-diphosphate-sugar epimerase; COG0702.
   
   0.586
HCH_03447
Polyketide synthase modules and related protein; COG3321.
  
 
 0.576
HCH_02644
Hypothetical protein.
       0.572
Your Current Organism:
Hahella chejuensis
NCBI taxonomy Id: 349521
Other names: H. chejuensis KCTC 2396, Hahella chejuensis KCTC 2396, Hahella chejuensis str. KCTC 2396, Hahella chejuensis strain KCTC 2396
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