STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCH_02707Protein-tyrosine-phosphatase; COG0394; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (126 aa)    
Predicted Functional Partners:
HCH_02726
Protein-tyrosine-phosphatase; COG0394; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
  
  0.964
kdsB
3-deoxy-D-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
      0.848
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
       0.827
HCH_00321
Fructosamine-3-kinase; COG3001; Belongs to the fructosamine kinase family.
 
     0.749
msbA
Lipid A export ATP-binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
   
   0.700
HCH_02701
Biopolymer transport protein; COG0848.
 
   
 0.659
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
       0.643
HCH_02705
Uncharacterized conserved protein; COG2835; Belongs to the UPF0434 family.
       0.643
HCH_02700
Biopolymer transport protein; COG0811.
 
     0.610
gumC
Chain length determinant protein; Uncharacterized protein involved in exopolysaccharide biosynthesis COG3206.
  
 
 0.585
Your Current Organism:
Hahella chejuensis
NCBI taxonomy Id: 349521
Other names: H. chejuensis KCTC 2396, Hahella chejuensis KCTC 2396, Hahella chejuensis str. KCTC 2396, Hahella chejuensis strain KCTC 2396
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