Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
HCH_00395 | HCH_00396 | Flagellar biosynthesis/type III secretory pathway protein; COG1317. | Mu-like prophage FluMu protein gp28; COG4373. | 0.975 |
HCH_00395 | HCH_02881 | Flagellar biosynthesis/type III secretory pathway protein; COG1317. | Uncharacterized protein conserved in bacteria; COG4643. | 0.424 |
HCH_00395 | HCH_06764 | Flagellar biosynthesis/type III secretory pathway protein; COG1317. | Mu-like prophage FluMu protein gp28; COG4373. | 0.950 |
HCH_00396 | HCH_00395 | Mu-like prophage FluMu protein gp28; COG4373. | Flagellar biosynthesis/type III secretory pathway protein; COG1317. | 0.975 |
HCH_00396 | HCH_02881 | Mu-like prophage FluMu protein gp28; COG4373. | Uncharacterized protein conserved in bacteria; COG4643. | 0.418 |
HCH_00396 | HCH_06765 | Mu-like prophage FluMu protein gp28; COG4373. | Probable phage capsid scaffolding protein. | 0.950 |
HCH_02878 | HCH_02879 | Hypothetical protein. | Hypothetical protein. | 0.610 |
HCH_02878 | HCH_02881 | Hypothetical protein. | Uncharacterized protein conserved in bacteria; COG4643. | 0.405 |
HCH_02879 | HCH_02878 | Hypothetical protein. | Hypothetical protein. | 0.610 |
HCH_02879 | HCH_02881 | Hypothetical protein. | Uncharacterized protein conserved in bacteria; COG4643. | 0.498 |
HCH_02881 | HCH_00395 | Uncharacterized protein conserved in bacteria; COG4643. | Flagellar biosynthesis/type III secretory pathway protein; COG1317. | 0.424 |
HCH_02881 | HCH_00396 | Uncharacterized protein conserved in bacteria; COG4643. | Mu-like prophage FluMu protein gp28; COG4373. | 0.418 |
HCH_02881 | HCH_02878 | Uncharacterized protein conserved in bacteria; COG4643. | Hypothetical protein. | 0.405 |
HCH_02881 | HCH_02879 | Uncharacterized protein conserved in bacteria; COG4643. | Hypothetical protein. | 0.498 |
HCH_02881 | HCH_06764 | Uncharacterized protein conserved in bacteria; COG4643. | Mu-like prophage FluMu protein gp28; COG4373. | 0.418 |
HCH_02881 | HCH_06765 | Uncharacterized protein conserved in bacteria; COG4643. | Probable phage capsid scaffolding protein. | 0.423 |
HCH_06764 | HCH_00395 | Mu-like prophage FluMu protein gp28; COG4373. | Flagellar biosynthesis/type III secretory pathway protein; COG1317. | 0.950 |
HCH_06764 | HCH_02881 | Mu-like prophage FluMu protein gp28; COG4373. | Uncharacterized protein conserved in bacteria; COG4643. | 0.418 |
HCH_06764 | HCH_06765 | Mu-like prophage FluMu protein gp28; COG4373. | Probable phage capsid scaffolding protein. | 0.975 |
HCH_06765 | HCH_00396 | Probable phage capsid scaffolding protein. | Mu-like prophage FluMu protein gp28; COG4373. | 0.950 |
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