STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCH_03108Conserved hypothetical protein. (119 aa)    
Predicted Functional Partners:
HCH_02966
Polyketide synthase modules and related protein; COG3321.
   
 0.577
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.567
HCH_03600
Cytochrome P450; COG2124; Belongs to the cytochrome P450 family.
   
 0.514
HCH_03601
Cytochrome P450; COG2124.
   
 0.514
HCH_02741
Conserved hypothetical protein.
  
 
 
 0.506
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.497
HCH_03444
Non-ribosomal peptide synthetase modules and related protein; COG1020.
   
 0.482
HCH_06860
Predicted acetyltransferase and Hydrolase with the alpha/beta hydrolase fold; COG1075.
  
     0.440
HCH_03425
Conserved hypothetical protein.
    
 
 0.429
HCH_03107
FOG: PAS/PAC domain; COG2202.
       0.424
Your Current Organism:
Hahella chejuensis
NCBI taxonomy Id: 349521
Other names: H. chejuensis KCTC 2396, Hahella chejuensis KCTC 2396, Hahella chejuensis str. KCTC 2396, Hahella chejuensis strain KCTC 2396
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.