STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCH_03127ABC-type oligopeptide transport system, periplasmic component; COG4166. (538 aa)    
Predicted Functional Partners:
HCH_03126
ABC-type dipeptide/oligopeptide/nickel transport system, permease components; COG0601.
 
 0.988
HCH_03125
ABC-type dipeptide/oligopeptide/nickel transport system, permease components; COG1173.
 
 0.984
HCH_00702
ABC-type dipeptide/oligopeptide/nickel transport system, permease components; COG0601.
 
 0.975
HCH_01128
ABC-type dipeptide/oligopeptide/nickel transport system, permease components; COG0601.
 
 0.974
HCH_03124
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; COG0444; Belongs to the ABC transporter superfamily.
 
 0.969
HCH_00701
ABC-type dipeptide/oligopeptide/nickel transport system, permease components; COG1173.
 
 0.968
HCH_01129
ABC-type dipeptide/oligopeptide/nickel transport system, permease components; COG1173.
 
 0.966
HCH_03123
ABC-type oligopeptide transport system, ATPase component; COG4608; Belongs to the ABC transporter superfamily.
 
 0.963
HCH_01130
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; COG0444; Belongs to the ABC transporter superfamily.
 
 0.952
HCH_01131
ABC-type oligopeptide transport system, ATPase component; COG4608; Belongs to the ABC transporter superfamily.
 
 0.949
Your Current Organism:
Hahella chejuensis
NCBI taxonomy Id: 349521
Other names: H. chejuensis KCTC 2396, Hahella chejuensis KCTC 2396, Hahella chejuensis str. KCTC 2396, Hahella chejuensis strain KCTC 2396
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