STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCH_03131Sigma 54-dependent transcriptional activator. (496 aa)    
Predicted Functional Partners:
rpoN
RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.803
HCH_05218
Signal transduction histidine kinase; COG0642.
  
 
 0.611
HCH_06013
Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain; COG5001.
   
 
 0.560
HCH_03647
Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain; COG5001.
   
 
 0.538
HCH_03845
FOG: EAL domain; COG2200.
   
 
 0.538
HCH_05072
Na+/proline symporter; COG0591.
   
 
 0.513
HCH_00809
Signal transduction histidine kinase; COG0642.
   
 
 0.499
HCH_00794
FOG: PAS/PAC domain; COG2202.
   
 
 0.492
HCH_03132
Hypothetical protein.
       0.482
hmp
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress; Belongs to the globin family. Two-domain flavohemoproteins subfamily.
     
 0.463
Your Current Organism:
Hahella chejuensis
NCBI taxonomy Id: 349521
Other names: H. chejuensis KCTC 2396, Hahella chejuensis KCTC 2396, Hahella chejuensis str. KCTC 2396, Hahella chejuensis strain KCTC 2396
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.