STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCH_03260Type III secretory pathway, component EscU; COG4792. (345 aa)    
Predicted Functional Partners:
HCH_03261
Type III secretory pathway, component EscT; COG4791.
  
 0.977
HCH_03263
Type III secretory pathway, component EscR; COG4790.
 
  
 0.957
HCH_03262
Type III secretory pathway, component EscS; COG4794.
 
  
 0.945
yscT
Type III secretory pathway, component EscT; COG4791.
  
 0.942
yscR
Type III secretory pathway, component EscR; COG4790.
 
  
 0.931
HCH_03273
Type III secretory pathway, component EscV; COG4789.
 
  
 0.927
HCH_05101
Type III secretory pathway, component EscV; COG4789.
 
  
 0.927
yscU
Type III secretory pathway, component EscU; COG4792.
  
  
 
0.904
yscS
Type III secretory pathway, component EscS; COG4794.
 
  
 0.902
HCH_03268
Flagellar biosynthesis/type III secretory pathway ATPase; COG1157.
 
  
 0.876
Your Current Organism:
Hahella chejuensis
NCBI taxonomy Id: 349521
Other names: H. chejuensis KCTC 2396, Hahella chejuensis KCTC 2396, Hahella chejuensis str. KCTC 2396, Hahella chejuensis strain KCTC 2396
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.