Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HCH_03910 | HCH_03911 | HCH_03910 | HCH_03911 | Putative threonine efflux protein; COG1280. | Conserved hypothetical protein. | 0.610 |
HCH_03910 | HCH_03912 | HCH_03910 | HCH_03912 | Putative threonine efflux protein; COG1280. | Transcriptional regulator; COG0583; Belongs to the LysR transcriptional regulatory family. | 0.431 |
HCH_03911 | HCH_03910 | HCH_03911 | HCH_03910 | Conserved hypothetical protein. | Putative threonine efflux protein; COG1280. | 0.610 |
HCH_03911 | HCH_03912 | HCH_03911 | HCH_03912 | Conserved hypothetical protein. | Transcriptional regulator; COG0583; Belongs to the LysR transcriptional regulatory family. | 0.541 |
HCH_03911 | HCH_05788 | HCH_03911 | HCH_05788 | Conserved hypothetical protein. | Collagenase family protein. | 0.453 |
HCH_03911 | aroQ1 | HCH_03911 | HCH_03913 | Conserved hypothetical protein. | Chorismate mutase, putative; TIGRFAMsMatches:TIGR01806. | 0.507 |
HCH_03912 | HCH_03910 | HCH_03912 | HCH_03910 | Transcriptional regulator; COG0583; Belongs to the LysR transcriptional regulatory family. | Putative threonine efflux protein; COG1280. | 0.431 |
HCH_03912 | HCH_03911 | HCH_03912 | HCH_03911 | Transcriptional regulator; COG0583; Belongs to the LysR transcriptional regulatory family. | Conserved hypothetical protein. | 0.541 |
HCH_03912 | aroQ1 | HCH_03912 | HCH_03913 | Transcriptional regulator; COG0583; Belongs to the LysR transcriptional regulatory family. | Chorismate mutase, putative; TIGRFAMsMatches:TIGR01806. | 0.475 |
HCH_05788 | HCH_03911 | HCH_05788 | HCH_03911 | Collagenase family protein. | Conserved hypothetical protein. | 0.453 |
aroQ1 | HCH_03911 | HCH_03913 | HCH_03911 | Chorismate mutase, putative; TIGRFAMsMatches:TIGR01806. | Conserved hypothetical protein. | 0.507 |
aroQ1 | HCH_03912 | HCH_03913 | HCH_03912 | Chorismate mutase, putative; TIGRFAMsMatches:TIGR01806. | Transcriptional regulator; COG0583; Belongs to the LysR transcriptional regulatory family. | 0.475 |