Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
HCH_00794 | HCH_00809 | FOG: PAS/PAC domain; COG2202. | Signal transduction histidine kinase; COG0642. | 0.985 |
HCH_00794 | HCH_01848 | FOG: PAS/PAC domain; COG2202. | Signal transduction histidine kinase; COG0642. | 0.852 |
HCH_00794 | HCH_03612 | FOG: PAS/PAC domain; COG2202. | Signal transduction histidine kinase; Member of a two-component regulatory system. | 0.813 |
HCH_00794 | HCH_04129 | FOG: PAS/PAC domain; COG2202. | Signal transduction histidine kinase; COG0642. | 0.813 |
HCH_00794 | HCH_04130 | FOG: PAS/PAC domain; COG2202. | Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; COG0745. | 0.909 |
HCH_00794 | HCH_04334 | FOG: PAS/PAC domain; COG2202. | Signal transduction histidine kinase; COG0642. | 0.813 |
HCH_00794 | HCH_05072 | FOG: PAS/PAC domain; COG2202. | Na+/proline symporter; COG0591. | 0.983 |
HCH_00794 | HCH_06409 | FOG: PAS/PAC domain; COG2202. | Signal transduction histidine kinase; COG0642. | 0.815 |
HCH_00809 | HCH_00794 | Signal transduction histidine kinase; COG0642. | FOG: PAS/PAC domain; COG2202. | 0.985 |
HCH_00809 | HCH_01848 | Signal transduction histidine kinase; COG0642. | Signal transduction histidine kinase; COG0642. | 0.870 |
HCH_00809 | HCH_03612 | Signal transduction histidine kinase; COG0642. | Signal transduction histidine kinase; Member of a two-component regulatory system. | 0.825 |
HCH_00809 | HCH_04129 | Signal transduction histidine kinase; COG0642. | Signal transduction histidine kinase; COG0642. | 0.825 |
HCH_00809 | HCH_04130 | Signal transduction histidine kinase; COG0642. | Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; COG0745. | 0.909 |
HCH_00809 | HCH_04334 | Signal transduction histidine kinase; COG0642. | Signal transduction histidine kinase; COG0642. | 0.825 |
HCH_00809 | HCH_05072 | Signal transduction histidine kinase; COG0642. | Na+/proline symporter; COG0591. | 0.984 |
HCH_00809 | HCH_06409 | Signal transduction histidine kinase; COG0642. | Signal transduction histidine kinase; COG0642. | 0.825 |
HCH_01848 | HCH_00794 | Signal transduction histidine kinase; COG0642. | FOG: PAS/PAC domain; COG2202. | 0.852 |
HCH_01848 | HCH_00809 | Signal transduction histidine kinase; COG0642. | Signal transduction histidine kinase; COG0642. | 0.870 |
HCH_01848 | HCH_04130 | Signal transduction histidine kinase; COG0642. | Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; COG0745. | 0.823 |
HCH_01848 | HCH_05072 | Signal transduction histidine kinase; COG0642. | Na+/proline symporter; COG0591. | 0.472 |
page 1 of 4