STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCH_04133Outer membrane protein; COG1538. (468 aa)    
Predicted Functional Partners:
HCH_03788
Cation/multidrug efflux pump; COG0841.
 0.980
HCH_03789
Membrane-fusion protein; COG0845; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 0.965
HCH_04132
Membrane-fusion protein; COG0845; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.965
HCH_02216
Cation/multidrug efflux pump; COG0841; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.917
HCH_03514
Cation/multidrug efflux pump; COG0841; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.915
HCH_05996
Outer membrane protein; COG1538.
     
 0.915
HCH_03760
Cation/multidrug efflux pump; COG0841; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.914
HCH_06941
Cation/multidrug efflux pump; COG0841.
 
 0.909
macB
ABC-type antimicrobial peptide transport system, permease component; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.908
HCH_04131
Cation/multidrug efflux pump; COG0841; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.905
Your Current Organism:
Hahella chejuensis
NCBI taxonomy Id: 349521
Other names: H. chejuensis KCTC 2396, Hahella chejuensis KCTC 2396, Hahella chejuensis str. KCTC 2396, Hahella chejuensis strain KCTC 2396
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