STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCH_04589Uncharacterized protein conserved in bacteria; COG3139. (94 aa)    
Predicted Functional Partners:
msrB
Conserved domain frequently associated with peptide methionine sulfoxide reductase; COG0229; Belongs to the MsrB Met sulfoxide reductase family.
  
    0.858
sdhD
Succinate dehydrogenase, hydrophobic anchor subunit; Membrane-anchoring subunit of succinate dehydrogenase (SDH).
  
    0.788
HCH_00044
Predicted nucleic-acid-binding protein containing a Zn-ribbon domain; COG3529.
  
     0.751
nfuA
Thioredoxin-like protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
  
     0.730
HCH_02762
Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); COG1366.
  
     0.729
HCH_04588
Conserved hypothetical protein.
 
    0.725
HCH_04590
Uncharacterized membrane protein; COG0705; similar to Drosophila rhomboid.
 
     0.725
gltX
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
  
   
 0.710
HCH_04591
Diadenosine tetraphosphatase and related serine/threonine protein phosphatase; COG0639.
 
     0.696
miaE
Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA; COG4445.
  
     0.691
Your Current Organism:
Hahella chejuensis
NCBI taxonomy Id: 349521
Other names: H. chejuensis KCTC 2396, Hahella chejuensis KCTC 2396, Hahella chejuensis str. KCTC 2396, Hahella chejuensis strain KCTC 2396
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