STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCH_04610Type II secretory pathway, component PulD; COG1450. (647 aa)    
Predicted Functional Partners:
gspC
General secretion pathway protein C; TIGRFAMsMatches:TIGR01713.
 
 
 0.984
gspG
General secretion pathway protein G; TIGRFAMsMatches:TIGR01710.
  
 0.906
HCH_03263
Type III secretory pathway, component EscR; COG4790.
  
 
 0.905
HCH_03938
Hypothetical protein.
 
 
 0.902
gspJ
General secretion pathway protein J; TIGRFAMsMatches:TIGR01711.
 
  
 0.876
gspK
Type II secretory pathway, component PulK; COG3156.
 
   
 0.851
gspI
General secretion pathway protein I; TIGRFAMsMatches:TIGR01707.
 
  
 0.831
gspF
General secretion pathway protein F; TIGRFAMsMatches:TIGR02120.
 
  
 0.826
HCH_03261
Type III secretory pathway, component EscT; COG4791.
  
 
 0.822
gspE
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 0.789
Your Current Organism:
Hahella chejuensis
NCBI taxonomy Id: 349521
Other names: H. chejuensis KCTC 2396, Hahella chejuensis KCTC 2396, Hahella chejuensis str. KCTC 2396, Hahella chejuensis strain KCTC 2396
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