Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
HCH_00077 | HCH_00274 | FOG: EAL domain; COG2200. | FOG: EAL domain; COG2200. | 0.418 |
HCH_00077 | HCH_00783 | FOG: EAL domain; COG2200. | Predicted signal transduction protein containing sensor and EAL domains; COG4943. | 0.416 |
HCH_00077 | HCH_01619 | FOG: EAL domain; COG2200. | FOG: EAL domain; COG2200. | 0.402 |
HCH_00077 | HCH_04633 | FOG: EAL domain; COG2200. | Response regulator containing a CheY-like receiver domain and a GGDEF domain; COG3706. | 0.813 |
HCH_00077 | HCH_06001 | FOG: EAL domain; COG2200. | FOG: EAL domain; COG2200. | 0.415 |
HCH_00274 | HCH_00077 | FOG: EAL domain; COG2200. | FOG: EAL domain; COG2200. | 0.418 |
HCH_00274 | HCH_00783 | FOG: EAL domain; COG2200. | Predicted signal transduction protein containing sensor and EAL domains; COG4943. | 0.601 |
HCH_00274 | HCH_00967 | FOG: EAL domain; COG2200. | FOG: EAL domain; COG2200. | 0.536 |
HCH_00274 | HCH_01619 | FOG: EAL domain; COG2200. | FOG: EAL domain; COG2200. | 0.610 |
HCH_00274 | HCH_03713 | FOG: EAL domain; COG2200. | FOG: EAL domain; COG2200. | 0.590 |
HCH_00274 | HCH_04128 | FOG: EAL domain; COG2200. | Predicted signal transduction protein containing sensor and EAL domains; COG4943. | 0.426 |
HCH_00274 | HCH_04270 | FOG: EAL domain; COG2200. | FOG: EAL domain; COG2200. | 0.587 |
HCH_00274 | HCH_04633 | FOG: EAL domain; COG2200. | Response regulator containing a CheY-like receiver domain and a GGDEF domain; COG3706. | 0.803 |
HCH_00274 | HCH_06001 | FOG: EAL domain; COG2200. | FOG: EAL domain; COG2200. | 0.630 |
HCH_00274 | HCH_06590 | FOG: EAL domain; COG2200. | FOG: EAL domain; COG2200. | 0.491 |
HCH_00783 | HCH_00077 | Predicted signal transduction protein containing sensor and EAL domains; COG4943. | FOG: EAL domain; COG2200. | 0.416 |
HCH_00783 | HCH_00274 | Predicted signal transduction protein containing sensor and EAL domains; COG4943. | FOG: EAL domain; COG2200. | 0.601 |
HCH_00783 | HCH_00967 | Predicted signal transduction protein containing sensor and EAL domains; COG4943. | FOG: EAL domain; COG2200. | 0.539 |
HCH_00783 | HCH_01619 | Predicted signal transduction protein containing sensor and EAL domains; COG4943. | FOG: EAL domain; COG2200. | 0.627 |
HCH_00783 | HCH_03713 | Predicted signal transduction protein containing sensor and EAL domains; COG4943. | FOG: EAL domain; COG2200. | 0.613 |
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