STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCH_04642FOG: TPR repeat; COG0457. (1131 aa)    
Predicted Functional Partners:
HCH_04641
Adenylate cyclase, family 3; COG2114; some protein contain HAMP domain.
 
     0.716
HCH_04643
Hypothetical protein.
       0.675
HCH_01459
Conserved hypothetical protein.
  
     0.573
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.555
hmgA
Homogentisate 1,2-dioxygenase; COG3508.
  
     0.422
HCH_06790
Membrane carboxypeptidase (penicillin-binding protein); COG0744.
 
     0.405
HCH_04640
CRP/FNR family transcriptional regulator, cyclic AMP receptor protein; COG0664.
 
     0.403
HCH_00148
Conserved hypothetical protein.
  
     0.400
Your Current Organism:
Hahella chejuensis
NCBI taxonomy Id: 349521
Other names: H. chejuensis KCTC 2396, Hahella chejuensis KCTC 2396, Hahella chejuensis str. KCTC 2396, Hahella chejuensis strain KCTC 2396
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.