Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
HCH_04708 | HCH_04709 | Hypothetical protein. | Hypothetical protein. | 0.773 |
HCH_04708 | HCH_04710 | Hypothetical protein. | Conserved hypothetical protein. | 0.469 |
HCH_04708 | HCH_04711 | Hypothetical protein. | FOG: TPR repeat; COG0457. | 0.407 |
HCH_04709 | HCH_04708 | Hypothetical protein. | Hypothetical protein. | 0.773 |
HCH_04709 | HCH_04710 | Hypothetical protein. | Conserved hypothetical protein. | 0.469 |
HCH_04709 | HCH_04711 | Hypothetical protein. | FOG: TPR repeat; COG0457. | 0.407 |
HCH_04710 | HCH_04708 | Conserved hypothetical protein. | Hypothetical protein. | 0.469 |
HCH_04710 | HCH_04709 | Conserved hypothetical protein. | Hypothetical protein. | 0.469 |
HCH_04710 | HCH_04711 | Conserved hypothetical protein. | FOG: TPR repeat; COG0457. | 0.655 |
HCH_04710 | HCH_04712 | Conserved hypothetical protein. | Diadenosine tetraphosphatase and related serine/threonine protein phosphatase; COG0639. | 0.430 |
HCH_04710 | HCH_04713 | Conserved hypothetical protein. | Transcriptional regulator; COG0583; Belongs to the LysR transcriptional regulatory family. | 0.430 |
HCH_04711 | HCH_04708 | FOG: TPR repeat; COG0457. | Hypothetical protein. | 0.407 |
HCH_04711 | HCH_04709 | FOG: TPR repeat; COG0457. | Hypothetical protein. | 0.407 |
HCH_04711 | HCH_04710 | FOG: TPR repeat; COG0457. | Conserved hypothetical protein. | 0.655 |
HCH_04711 | HCH_04712 | FOG: TPR repeat; COG0457. | Diadenosine tetraphosphatase and related serine/threonine protein phosphatase; COG0639. | 0.497 |
HCH_04711 | HCH_04713 | FOG: TPR repeat; COG0457. | Transcriptional regulator; COG0583; Belongs to the LysR transcriptional regulatory family. | 0.497 |
HCH_04712 | HCH_04710 | Diadenosine tetraphosphatase and related serine/threonine protein phosphatase; COG0639. | Conserved hypothetical protein. | 0.430 |
HCH_04712 | HCH_04711 | Diadenosine tetraphosphatase and related serine/threonine protein phosphatase; COG0639. | FOG: TPR repeat; COG0457. | 0.497 |
HCH_04712 | HCH_04713 | Diadenosine tetraphosphatase and related serine/threonine protein phosphatase; COG0639. | Transcriptional regulator; COG0583; Belongs to the LysR transcriptional regulatory family. | 0.773 |
HCH_04713 | HCH_04710 | Transcriptional regulator; COG0583; Belongs to the LysR transcriptional regulatory family. | Conserved hypothetical protein. | 0.430 |
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