Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HCH_04519 | HCH_05634 | HCH_04519 | HCH_05634 | ABC-type branched-chain amino acid transport system, periplasmic component; COG0683. | Hypothetical protein. | 0.839 |
HCH_05037 | HCH_05634 | HCH_05037 | HCH_05634 | Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS-like protein; COG2080. | Hypothetical protein. | 0.400 |
HCH_05634 | HCH_04519 | HCH_05634 | HCH_04519 | Hypothetical protein. | ABC-type branched-chain amino acid transport system, periplasmic component; COG0683. | 0.839 |
HCH_05634 | HCH_05037 | HCH_05634 | HCH_05037 | Hypothetical protein. | Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS-like protein; COG2080. | 0.400 |
HCH_05634 | coxS | HCH_05634 | HCH_01589 | Hypothetical protein. | Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS-like protein; COG2080. | 0.400 |
HCH_05634 | istA2 | HCH_05634 | HCH_05635 | Hypothetical protein. | Transposase, IS21 family; Transposase and inactivated derivatives COG4584. | 0.569 |
HCH_05634 | istB2 | HCH_05634 | HCH_05636 | Hypothetical protein. | IstB helper protein, IS21 family; DNA replication protein; COG1484. | 0.554 |
coxS | HCH_05634 | HCH_01589 | HCH_05634 | Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS-like protein; COG2080. | Hypothetical protein. | 0.400 |
istA2 | HCH_05634 | HCH_05635 | HCH_05634 | Transposase, IS21 family; Transposase and inactivated derivatives COG4584. | Hypothetical protein. | 0.569 |
istA2 | istB2 | HCH_05635 | HCH_05636 | Transposase, IS21 family; Transposase and inactivated derivatives COG4584. | IstB helper protein, IS21 family; DNA replication protein; COG1484. | 0.951 |
istB2 | HCH_05634 | HCH_05636 | HCH_05634 | IstB helper protein, IS21 family; DNA replication protein; COG1484. | Hypothetical protein. | 0.554 |
istB2 | istA2 | HCH_05636 | HCH_05635 | IstB helper protein, IS21 family; DNA replication protein; COG1484. | Transposase, IS21 family; Transposase and inactivated derivatives COG4584. | 0.951 |