STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCH_05735Subtilisin-like serine protease; COG1404; Belongs to the peptidase S8 family. (851 aa)    
Predicted Functional Partners:
HCH_06949
Secreted trypsin-like serine protease; COG5640.
 
 0.937
HCH_01695
Subtilisin-like serine protease; COG1404; Belongs to the peptidase S8 family.
  
  
 
0.925
parE
DNA topoisomerase IV, B subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.
     
 0.585
HCH_05736
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases; COG0154; Belongs to the amidase family.
   
   0.555
HCH_00059
Conserved hypothetical protein.
   
 
 0.499
HCH_05544
Alpha-tubulin suppressor and related RCC1 domain-containing protein; COG5184.
   
 
 0.499
HCH_06140
Conserved hypothetical protein.
 
   0.462
HCH_05006
Protein containing BNR/Asp-box repeats.
 
 
   0.444
HCH_03035
Secreted trypsin-like serine protease; COG5640.
 
 
 0.433
secY
Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
 
 0.419
Your Current Organism:
Hahella chejuensis
NCBI taxonomy Id: 349521
Other names: H. chejuensis KCTC 2396, Hahella chejuensis KCTC 2396, Hahella chejuensis str. KCTC 2396, Hahella chejuensis strain KCTC 2396
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