STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speAArginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. (636 aa)    
Predicted Functional Partners:
HCH_03622
Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; COG0010; Belongs to the arginase family.
  
 
 0.938
aruF
Arginine/ornithine N-succinyltransferase beta subunit COG3138.
     
  0.900
aruG
Arginine/ornithine N-succinyltransferase beta subunit COG3138.
     
  0.900
argH
Argininosuccinate lyase; TIGRFAMsMatches:TIGR00838.
     
 0.847
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
    
 0.838
arcA
Arginine deiminase; TIGRFAMsMatches:TIGR01078.
    
  0.822
HCH_02347
Peptidylarginine deiminase and related enzyme; COG2957; Belongs to the agmatine deiminase family.
 
   
 0.804
HCH_02346
Predicted amidohydrolase; COG0388.
 
   
 0.681
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
 
    0.486
fabD
Malonyl CoA-acyl carrier protein transacylase; TIGRFAMsMatches:TIGR00128.
   
    0.440
Your Current Organism:
Hahella chejuensis
NCBI taxonomy Id: 349521
Other names: H. chejuensis KCTC 2396, Hahella chejuensis KCTC 2396, Hahella chejuensis str. KCTC 2396, Hahella chejuensis strain KCTC 2396
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