STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCH_06602Glutathionylspermidine synthase; COG0754. (387 aa)    
Predicted Functional Partners:
HCH_06601
Predicted integral membrane protein; COG5463.
 
  
 0.968
HCH_06600
Predicted membrane protein; COG3766.
 
   0.958
HCH_06597
Phage shock protein A (IM30), suppresses sigma54-dependent transcription; COG1842.
 
     0.799
HCH_06598
Kef-type K+ transport system, predicted NAD-binding component; COG1226.
 
     0.798
HCH_06599
Conserved hypothetical protein.
       0.647
HCH_06595
Uncharacterized protein conserved in bacteria; COG3789.
       0.593
HCH_06603
Hypothetical protein.
       0.511
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
    
   0.426
Your Current Organism:
Hahella chejuensis
NCBI taxonomy Id: 349521
Other names: H. chejuensis KCTC 2396, Hahella chejuensis KCTC 2396, Hahella chejuensis str. KCTC 2396, Hahella chejuensis strain KCTC 2396
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