STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCH_06606TRAP-type C4-dicarboxylate transport system, small permease component; COG3090. (186 aa)    
Predicted Functional Partners:
HCH_06607
TRAP-type C4-dicarboxylate transport system, large permease component; COG1593.
 
 
 0.981
HCH_06605
TRAP-type C4-dicarboxylate transport system, periplasmic component; COG1638.
 
  
 0.946
HCH_05776
TRAP-type C4-dicarboxylate transport system, large permease component; COG1593.
 
 
 0.862
HCH_05774
TRAP-type C4-dicarboxylate transport system, periplasmic component; COG1638.
 
  
 0.799
HCH_06432
TRAP-type C4-dicarboxylate transport system, large permease component; COG1593.
 
 
 0.796
HCH_00560
Probable membrane protein, transporter-related.
 
 
 0.697
HCH_06434
TRAP-type C4-dicarboxylate transport system, periplasmic component; COG1638.
 
  
 0.663
HCH_00934
TRAP-type uncharacterized transport system, fused permease components; COG4666.
  
     0.482
HCH_04666
Conserved hypothetical protein.
  
     0.439
HCH_04108
Predicted permease, DMT superfamily; COG5006.
  
     0.436
Your Current Organism:
Hahella chejuensis
NCBI taxonomy Id: 349521
Other names: H. chejuensis KCTC 2396, Hahella chejuensis KCTC 2396, Hahella chejuensis str. KCTC 2396, Hahella chejuensis strain KCTC 2396
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