Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HCH_06871 | HCH_06872 | HCH_06871 | HCH_06872 | Conserved hypothetical protein. | Hypothetical protein. | 0.773 |
HCH_06871 | HCH_06873 | HCH_06871 | HCH_06873 | Conserved hypothetical protein. | Predicted membrane protein; COG3205. | 0.513 |
HCH_06871 | acnA | HCH_06871 | HCH_06874 | Conserved hypothetical protein. | Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. | 0.463 |
HCH_06872 | HCH_06871 | HCH_06872 | HCH_06871 | Hypothetical protein. | Conserved hypothetical protein. | 0.773 |
HCH_06872 | HCH_06873 | HCH_06872 | HCH_06873 | Hypothetical protein. | Predicted membrane protein; COG3205. | 0.513 |
HCH_06872 | acnA | HCH_06872 | HCH_06874 | Hypothetical protein. | Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. | 0.443 |
HCH_06873 | HCH_06871 | HCH_06873 | HCH_06871 | Predicted membrane protein; COG3205. | Conserved hypothetical protein. | 0.513 |
HCH_06873 | HCH_06872 | HCH_06873 | HCH_06872 | Predicted membrane protein; COG3205. | Hypothetical protein. | 0.513 |
HCH_06873 | acnA | HCH_06873 | HCH_06874 | Predicted membrane protein; COG3205. | Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. | 0.655 |
acnA | HCH_06871 | HCH_06874 | HCH_06871 | Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. | Conserved hypothetical protein. | 0.463 |
acnA | HCH_06872 | HCH_06874 | HCH_06872 | Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. | Hypothetical protein. | 0.443 |
acnA | HCH_06873 | HCH_06874 | HCH_06873 | Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. | Predicted membrane protein; COG3205. | 0.655 |