STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acnAAconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (890 aa)    
Predicted Functional Partners:
icd
Isocitrate dehydrogenase, NADP-dependent; TIGRFAMsMatches:TIGR00183.
 
 0.993
gltA
Citrate synthase I; TIGRFAMsMatches:TIGR01798; Belongs to the citrate synthase family.
 
 0.992
HCH_02564
Citrate synthase-like protein; Citrate synthase; COG0372.
  
 0.988
HCH_02563
Hypothetical protein.
  
 0.987
HCH_02711
Citrate synthase; COG0372; Belongs to the citrate synthase family.
 
 0.976
HCH_03212
Isocitrate dehydrogenase, NADP-dependent; TIGRFAMsMatches:TIGR00178; Belongs to the monomeric-type IDH family.
 
 
 0.944
acnB
Aconitate hydratase 2; TIGRFAMsMatches:TIGR00117; Belongs to the aconitase/IPM isomerase family.
    
 0.939
aceA
Isocitrate lyase; TIGRFAMsMatches:TIGR01346.
   
 
 0.932
HCH_04606
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
 
 0.929
sdhB
Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit COG0479.
  
 
 0.889
Your Current Organism:
Hahella chejuensis
NCBI taxonomy Id: 349521
Other names: H. chejuensis KCTC 2396, Hahella chejuensis KCTC 2396, Hahella chejuensis str. KCTC 2396, Hahella chejuensis strain KCTC 2396
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