STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCH_06879Putative Zn-dependent protease, contains TPR repeats; COG4783. (253 aa)    
Predicted Functional Partners:
HCH_01351
Membrane-bound metallopeptidase; COG4942.
 
 
 
 0.654
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
  
    0.624
HCH_06878
Conserved hypothetical protein.
       0.494
HCH_06559
Outer membrane receptor for ferrienterochelin and colicins; COG4771.
  
     0.475
HCH_06880
Uncharacterized conserved protein; COG1739.
       0.462
cirA
Outer membrane receptor for ferrienterochelin and colicins; COG4771.
  
     0.417
HCH_06941
Cation/multidrug efflux pump; COG0841.
  
     0.406
HCH_06942
Membrane-fusion protein; COG0845; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.405
Your Current Organism:
Hahella chejuensis
NCBI taxonomy Id: 349521
Other names: H. chejuensis KCTC 2396, Hahella chejuensis KCTC 2396, Hahella chejuensis str. KCTC 2396, Hahella chejuensis strain KCTC 2396
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